Jump to content

19: Bret Weinstein - The Prediction and the DISC: Difference between revisions

no edit summary
No edit summary
Tags: Mobile edit Mobile web edit
No edit summary
Tags: Mobile edit Mobile web edit
Line 437: Line 437:
'''Eric:''' Alright. I'm the older brother.  
'''Eric:''' Alright. I'm the older brother.  


'''Bret:''' I've noticed I have the ultimate Marcia Marcia market problem.  
'''Bret:''' I've noticed I have the ultimate ‘Marsha, Marsha, Marsha!’ problem.  


'''Eric:''' All right. Bret, this is not the story of your career and your life. What happened is that you got stuck at the university of Michigan for a very long period of time, because you made people very uncomfortable. What he's saying in that letter of recommendation is that you wrote four different theses, so far as I can remember, and they were on widely different topics. Furthermore, here's an interesting one: no one that I know of, despite the amount of discussion that's been spilled in ink over Evergreen, has put you together with the hero of a book called The Tapir’s Morning Bath, that appeared years earlier.  
'''Eric:''' All right. Bret, this is not the story of your career and your life. What happened is that you got stuck at the University of Michigan for a very long period of time, because you made people very uncomfortable. What he's saying in that letter of recommendation is that you wrote four different theses, so far as I can remember, and they were on widely different topics. Furthermore, here's an interesting one: no one that I know of, despite the amount of discussion that's been spilled in ink over Evergreen, has put you together with the hero of a book called The Tapir’s Morning Bath, that appeared years earlier.  


'''Bret:''' It's odd that it never shows up.
'''Bret:''' It's odd that it never shows up.


'''Eric:''' Right? It never shows up. And then you're also the recipient of the Golden Gazelle award, I think of the National Organization of Women, for standing up to ZBT at the University of Pennsylvania. And you got ejected, effectively, from an Ivy League school due to threats of physical violence for standing up for black women being exploited by white men. I mean, like, then you're like the, the field assistant and main student as an undergraduate of another legendary evolutionary theorist, Bob Trivers. And somehow, you know, Richard Dawkins is treating you as a guy who isn't really his equal. “You're not really a major theorist. You're very confused and you need to learn more about the extended phenotype” and all this kind of nonsense. And you're so polite that you're not even just, I dunno, I think you're out to lunch. No offense.  
'''Eric:''' Right? It never shows up. And then you're also the recipient of the Golden Gazelle award, I think of the National Organization of Women, for standing up to ZBT at the University of Pennsylvania. And you got ejected, effectively, from an Ivy League school due to threats of physical violence for standing up for black women being exploited by white men. Then, you're the field assistant and main student as an undergraduate of another legendary evolutionary theorist, Bob Trivers. And somehow, you know, Richard Dawkins is treating you as a guy who isn't really his equal-‘You’re not really a major theorist, you’re very confused, and you need to learn more about the extended phenotype,’ and all this kind of nonsense. And you're so polite that-I think you're out to lunch. No offense.  


'''Bret:''' I get it. I get it. And you know, like I said, you may be right.  
'''Bret:''' I get it. I get it. And you know, like I said, you may be right.  
Line 449: Line 449:
'''Eric:''' Okay. I want to talk about the subjects that you're most associated with starting with your thesis. And I want to get into the science of it using  podcast. If people get left behind, they get left behind.  
'''Eric:''' Okay. I want to talk about the subjects that you're most associated with starting with your thesis. And I want to get into the science of it using  podcast. If people get left behind, they get left behind.  


'''Bret:''' Okay.  
'''Bret:''' OK.  


'''Eric:''' Okay. Now Dick Alexander is a legend in evolutionary theory because it's very hard to use evolutionary theory to make predictions that can be verified in the world. It's sort of this loose amorphous collection of techniques and viewpoints. And people sometimes think it's not even a theory because it doesn't seem to be predictive.
'''Eric:''' OK. Now Dick Alexander is a legend in evolutionary theory because it's very hard to use evolutionary theory to make predictions that can be verified in the world. It's sort of this loose amorphous collection of techniques and viewpoints. And people sometimes think it's not even a theory because it doesn't seem to be predictive.


(00:40:37)
(00:40:37)
Line 461: Line 461:
'''Eric:''' I didn't know that.  
'''Eric:''' I didn't know that.  


'''Bret:''' But he was absolutely correct. There is a moth that has this beautifully long tongue. It's a Sphingid Hawkmoth, one of these sort of hummingbird-esque moths, and anyway, yeah, it's one of the major predictions, demonstrations, that evolutionary theory actually can be used to predict phenomena that you haven't been able to observe.
'''Bret:''' But he was absolutely correct. There is a moth that has this beautifully long tongue, it’s a Sphingid Hawkmoth-one of these sort of hummingbird-esque moths-and anyway, yeah, it's one of the major predictions, demonstrations, that evolutionary theory actually can be used to predict phenomena that you haven't been able to observe.


(00:41:34)
(00:41:34)


'''Eric:''' Okay. And you know, Darwin famously couldn't, for example, like, I don't know how much I've talked about this in the open, but my favorite Darwin book is the one he wrote after [https://en.wikipedia.org/wiki/On_the_Origin_of_Species Origin of Species], which is [https://en.wikipedia.org/wiki/Fertilisation_of_Orchids On the Various Contrivances by Which British and Foreign Orchids are Fertilized by Insects]. It makes absolutely no sense as a title, I think that's what's so funny about it. But because orchids are so highly speciated, it turned out to be the perfect place to explore the consequences of evolution. And he couldn't figure out my favorite, I don't know whether it's clade or a group—
'''Eric:''' OK. And you know, Darwin famously couldn't-I don't know how much I've talked about this in the open, but my favorite Darwin book is the one he wrote after [https://en.wikipedia.org/wiki/On_the_Origin_of_Species Origin of Species], which is [https://en.wikipedia.org/wiki/Fertilisation_of_Orchids On the Various Contrivances by Which British and Foreign Orchids are Fertilized by Insects]. It makes absolutely no sense as a title-I think that's what's so funny about it. But because orchids are so highly speciated, it turned out to be the perfect place to explore the consequences of evolution. And he couldn't figure out-my favorite clade? or group?


'''Bret:''' Clade is pretty safe.  
'''Bret:''' Clade is pretty safe.  


'''Eric:''' Yeah, clade of orchids, the [https://en.wikipedia.org/wiki/Ophrys Ophrys] system, which is just unbelievable because it mimics the pollinators, the female of the pollinator species using pheromones and some sort of replica good enough to fool males into copulating with the lower pedal of an orchid—
'''Eric:''' Yeah, clade of orchids, the [https://en.wikipedia.org/wiki/Ophrys Ophrys] system, which is just unbelievable because it mimics the female of the pollinator species using pheromones and some sort of replica good enough to fool males into copulating with the lower pedal of an orchid—


'''Bret:''' A 3D replica of the female that smells like her.  And it just so happens that when the male lands on it to copulate, he gets these pollen packets glued to him, and then he screws up and makes the same mistake at another flower and delivers—
'''Bret:''' A 3D replica of the female that smells like her.  And it just so happens that when the male lands on it to copulate, he gets these pollen packets glued to him, and then he screws up and makes the same mistake at another flower and delivers—
Line 481: Line 481:
'''Bret:''' The reason that it gets glued to him is that it has worked enough times for this strategy to have been so beautifully refined.  
'''Bret:''' The reason that it gets glued to him is that it has worked enough times for this strategy to have been so beautifully refined.  


'''Eric:''' Right. So Darwin saw that there was this mimicry going on, but he couldn't put it together. He spent pages and pages not getting it. So I think it's very funny. So he predicts some things, but he can't predict something else in a very closely related system. Okay. Fast forward, Dick Alexander comes out with a crazy prediction, which I still don't fully—I mean, it's just amazing that he made it—where he says, I bet that you will find the kind of behavior we associate with wasps and bees, which is in this clade called Hymenopteran ants of [https://en.wikipedia.org/wiki/Eusociality eusocial] breeding patterns and organization, but in mammals that will live underground.  
'''Eric:''' Right. So Darwin saw that there was this mimicry going on, but he couldn't put it together. He spent pages and pages not getting it. So I think it's very funny. So he predicts some things, but he can't predict something else in a very closely related system. OK. Fast forward, Dick Alexander comes out with a crazy prediction, which I still don't fully—I mean, it's just amazing that he made it—where he says, I bet that you will find the kind of behavior we associate with wasps and bees, which is in this clade called Hymenopteran Ants of [https://en.wikipedia.org/wiki/Eusociality eusocial] breeding patterns and organization, but in mammals that will live underground.  


'''Bret:''' So, I think, the way this story actually worked, he didn't say you will find it—  
'''Bret:''' So, I think, the way this story actually worked, he didn't say you will find it—  
Line 491: Line 491:
'''Eric:''' So we should say that there's something funny about the system of ants, bees, wasps, which is that they've got this very strange [https://en.wikipedia.org/wiki/Haplodiploidy haplodiploid] chromosomal characteristic. Do you want to say a word about that? Cause that makes the prediction more—
'''Eric:''' So we should say that there's something funny about the system of ants, bees, wasps, which is that they've got this very strange [https://en.wikipedia.org/wiki/Haplodiploidy haplodiploid] chromosomal characteristic. Do you want to say a word about that? Cause that makes the prediction more—


'''Bret:''' Sure. So it has long been understood that the [https://en.wikipedia.org/wiki/Hymenoptera Hymenoptera] behave in this incredibly cooperative fashion, which effectively all of the workers of the colony forgo reproduction in order to advance the reproductive interests of the queen. And it was late discovered that actually their genetic system is unlike our genetic system, and that males have basically half a full complement of genes. They have enough greens to function, but they have half the female complement of genes. And, for reasons that are mathematically slightly complicated and require a chalkboard, the females are more closely related to the daughters produced by their mother than they would be to their own offspring, their three quarters relatives to her offspring. And there they would be 50% relatives to their own offspring.  
'''Bret:''' Sure. So it has long been understood that the [https://en.wikipedia.org/wiki/Hymenoptera Hymenoptera] behave in this incredibly cooperative fashion, [in] which effectively all of the workers of the colony forego reproduction in order to advance the reproductive interests of the queen. And it was late discovered that actually their genetic system is unlike our genetic system, and that males have basically half a full complement of genes. They have enough genes to function, but they have half the female complement of genes. And, for reasons that are mathematically slightly complicated and require a chalkboard, the females are more closely related to the daughters produced by their mother than they would be to their own offspring; they’re three-quarters relatives to her offspring, and they would be 50% relatives to their own offspring.  


'''Eric:''' Spot on.
'''Eric:''' Spot on.


'''Bret:''' So, they are actually evolutionarily favored by very standard mechanisms. Once you understand the crazy genetics underlying the thing, they are favored to engage in behavior where they forgot reproducing and fostered.
'''Bret:''' So, they are actually evolutionarily favored by very standard mechanisms. Once you understand the crazy genetics underlying the thing, they are favored to engage in behavior where they forego reproducing and foster-


'''Eric:''' So, once you understand the chromosomal difference of the system, it is far less surprising that it would behave as a loosely coupled, in some way—don't overreact—unified organism, which is distributed. That there are ways in which the hive behaves as a superorganism, and there are ways in which it does not.
'''Eric:''' So, once you understand the chromosomal difference of the system, it is far less surprising that it would behave as a loosely coupled, in some way—don't overreact—unified organism, which is distributed… that there are ways in which the hive behaves as a superorganism, and there are ways in which it does not.


(00:45:40)
(00:45:40)
Line 505: Line 505:
'''Eric:''' Right.  
'''Eric:''' Right.  


'''Bret:''' And I actually, frankly just don't know where that research stands at the moment. We have found many other insect systems that have various versions of this. Interestingly, though, the termites are not hymenopteras.  
'''Bret:''' And I actually, frankly just don't know where that research stands at the moment. We have found many other insect systems that have various versions of this. Interestingly, though, the termites are not Hymenopteras.


'''Eric:''' Right.  
'''Eric:''' Right.  
Line 519: Line 519:
'''Bret:''' But they don't have the strange genetic system, proving that the behavior can evolve even in the absence of this genetic system—  
'''Bret:''' But they don't have the strange genetic system, proving that the behavior can evolve even in the absence of this genetic system—  


'''Eric:''' Well, the reason I bring this up is that if you look at, for example, Prince Peter Kropotkin, the great anarchists theorist, he was obsessed by finding analogs in nature of preferred human structures. And so it's very simple to say, why can't we work together the way an ant colony all works together? And then there's a counter to that, which is, well, they have different chromosomal structures, and then you say, well, but yes, but that's a kind of a cheap way of achieving eusociality. There are other ways of—so through this crazy kind of investigation, we get to Dick Alexander, who, and I think you're quite correct, says there is nothing prohibiting us from finding a mammalian species that exhibits ant- and wasp- like behavior. And it would be likely to have these characteristics, it would live underground, in a—
'''Eric:''' Well, the reason I bring this up is that if you look at, for example, Prince Peter Kropotkin, the great anarchist theorist, he was obsessed by finding analogs in nature of preferred human structures. And so it's very simple to say, why can't we work together the way an ant colony all works together? And then there's a counter to that, which is, well, they have different chromosomal structures, and then you say, well, but yes, but that's a kind of a cheap way of achieving eusociality. There are other ways of—so through this crazy kind of investigation, we get to Dick Alexander, who, and I think you're quite correct, says there is nothing prohibiting us from finding a mammalian species that exhibits ant- and wasp- like behavior. And it would be likely to have these characteristics, it would live underground, in a—


'''Bret:''' Yeah, underground, I believe eating tubers, was on the thing. It was a crazy list. And you know, my understanding from, from Dick—Dick is now unfortunately dead. He died a couple of years ago. But my understanding from him was that he didn't actually expect to find such an animal. He was speaking very abstractly, just completely theoretically. And at the point that he unleashed this idea, it may even have been in a talk, rather than a paper. The information made it back to him, actually—what about [https://en.wikipedia.org/wiki/Naked_mole-rat naked mole-rats]? They match your characteristics, and study reveals then that actually they are eusocial, they behave very much like ants, bees, wasps, termites, et cetera.  
'''Bret:''' Yeah, underground, I believe eating tubers, was on the thing. It was a crazy list. And you know, my understanding from Dick—Dick is now unfortunately dead. He died a couple of years ago. But my understanding from him was that he didn't actually expect to find such an animal. He was speaking very abstractly, just completely theoretically. And at the point that he unleashed this idea, it may even have been in a talk, rather than a paper. The information made it back to him, actually—what about [https://en.wikipedia.org/wiki/Naked_mole-rat naked mole-rats]? They match your characteristics, and study reveals then that actually they are eusocial, they behave very much like ants, bees, wasps, termites, et cetera.  


'''Eric:''' And this is like one of the great moments in modern science.  
'''Eric:''' And this is like one of the great moments in modern science.  


'''Bret:''' I really think it is. It's certainly the moment that people who know who Dick Alexander was, reference as sort of the high watermark because it's comprehensible. You know, Dick did a lot of things. He was very interested in people and other things, but this particular demonstration was so, it would be impossible to have predicted such a thing and have gotten lucky. He had to have understood some things that were extremely deep in order for that to have worked out. And so, yeah, it's really, I don't know of another example in evolutionary theory of a prediction that clean, of something that obscure.
'''Bret:''' I really think it is. It's certainly the moment that people who know who Dick Alexander was, reference as sort of the high watermark because it's comprehensible. You know, Dick did a lot of things. He was very interested in people and other things, but this particular demonstration was so-it would be impossible to have predicted such a thing and have gotten lucky. He had to have understood some things that were extremely deep in order for that to have worked out. And so I don't know of another example in evolutionary theory of a prediction that clean, of something that obscure.
 
 
 


'''Eric:''' I know one.  
'''Eric:''' I know one.  
Line 537: Line 540:
'''Eric:''' Yeah.
'''Eric:''' Yeah.


'''Bret:''' Yeah. Yeah, that story that didn't happen exactly the way you said it, but you know, it's been a lot of years, and it takes a second to get back there.  
'''Bret:''' Yeah. That story that didn't happen exactly the way you said it, but you know, it's been a lot of years, and it takes a second to get back there.  


'''Eric:''' Yeah. I mean it's, you, you did that.
'''Eric:''' Yeah. I mean-you did that!


'''Bret:''' Yeah, I did that.
'''Bret:''' Yeah, I did that.
Line 547: Line 550:
'''Bret:''' It's a pretty good one, and it definitely changed the way I saw myself in a way that has been very productive.  
'''Bret:''' It's a pretty good one, and it definitely changed the way I saw myself in a way that has been very productive.  


'''Eric:''' Okay. I want you to talk to me about that story, and because I lived it with you, I know that it happened, and I know that it got buried, and I know that it's part of what I'm calling the Distributed Idea Suppression Complex because, quite frankly, you were not the only person who was a part of the story, and the story had to die because it said something, which is that the power of your theory was sufficient to predict, from first principles, a manifestly observed and surprising result, within molecular biology, from pure evolutionary principles.
'''Eric:''' OK. I want you to talk to me about that story, and because I lived it with you, I know that it happened, and I know that it got buried, and I know that it's part of what I'm calling the Distributed Idea Suppression Complex because, quite frankly, you were not the only person who was a part of the story, and the story had to die because it said something, which is that the power of your theory was sufficient to predict, from first principles, a manifestly observed and surprising result, within molecular biology, from pure evolutionary principles.


(00:50:47)
(00:50:47)


'''Bret:''' Yup. All right. I'll try to do a short version of it.
'''Bret:''' Yep. All right. I'll try to do a short version of it.
 
'''Eric:''' You know, this is long form podcasting, and you tell—however long the story is, I guarantee you when people finally figure out that it may be that the rodents that we've used to test drugs on, let's say, might be compromised, and compromised in a way that would be potentially extra permitting of potential toxins in the form of pharmaceuticals-I think that it's going to be fascinating. And it's going to repay the study that it will take to understand the story. The floor is yours.
 
 


'''Eric:''' You know, this is long form podcasting, and you tell—however long the story is, I guarantee you when people finally figure out that it may be that the rodents that we've used to test drugs on, let's say, might be compromised, and compromised in a way that would be potentially extra permitting of potential toxins in the form of pharmaceuticals. I think that it's going to be fascinating. And it's going to repay the study that it will take to understand the story. The floor is yours.


'''Bret:''' All right, so let me just set the stage a little bit. Evolutionary biology has—  
'''Bret:''' All right, so let me just set the stage a little bit. Evolutionary biology has—  
Line 565: Line 571:
'''Bret:''' I'm going to tell it the way it actually occurred. And I'm going to be careful. I'm going to try not to be—there are parts of it that were for a very long time kind of emotionally fraught. But anyway, I think I remember it well enough to do a sparse but complete version.  
'''Bret:''' I'm going to tell it the way it actually occurred. And I'm going to be careful. I'm going to try not to be—there are parts of it that were for a very long time kind of emotionally fraught. But anyway, I think I remember it well enough to do a sparse but complete version.  


'''Eric:''' Okay.  
'''Eric:''' OK.  


'''Bret:''' Evolutionary biology has long been biased in the direction of abstraction, rather than thinking about mechanism. That is to say, we deal in the phenomenology of things. We talk about gross patterns that we see in nature rather than talking about the fine detail of what drives them. That has been changing in recent decades, but it has a long history, and it comes from a very mundane place. That mundane place is that we just haven't had the tools to look, for example, inside of cells and we haven't been able to read genomes. You know, we could have been able to read a gene here and there at great expense, but the ability to peer into genomes is pretty new. The ability to peer into these molecular pathways is pretty new. So anyway, there's a historical bias in evolutionary biology against mechanism and in the direction of phenomenology. I have never been particularly fond of that bias. I have always been interested in [https://en.wikipedia.org/wiki/Mechanism_(biology) mechanism]. I'm interested in the phenomenology too, but I've always kept my foot in the door with respect to mechanism. And as an undergraduate, I took lots of mechanism classes. I took a development class. At the time, developmental biology was, in my opinion, a bit stuck. It is now unstuck in a very dramatic way. But anyway, I took a developmental biology class. I took some immunobiology. And anyway, I was armed with these things in an environment in evolutionary biology where most people were not; most people were in the phenomenology. And one day I happened to be in a seminar. Dick Alexander was running a seminar for graduate students, and a student was there who was very out of place. He was studying cancer, and he, on a lark, decided to take an evolution seminar that looked good to him in the catalog, and it wasn't right for him. And he gave a talk at some point, and his talk was on his work with cancer. And frankly, because all the other people in the room were evolutionarily oriented, nobody was really tracking what he was saying. But what he said struck me like a bolt of lightning. He said that in the realm of cancer research, people were looking at telomeres, which are these repetitive sequences at the ends of chromosomes. And they were toying with the possibility that the fact that these telomeres shorten every time a cell divides, that that is providing a resistance to tumor formation. Very straightforward—counter counts down, and that would prevent—
'''Bret:''' Evolutionary biology has long been biased in the direction of abstraction, rather than thinking about mechanism. That is to say, we deal in the phenomenology of things. We talk about gross patterns that we see in nature rather than talking about the fine detail of what drives them. That has been changing in recent decades, but it has a long history, and it comes from a very mundane place. That mundane place is that we just haven't had the tools to look, for example, inside of cells, and we haven't been able to read genomes. We could have been able to read a gene here and there at great expense, but the ability to peer into genomes is pretty new. The ability to peer into these molecular pathways is pretty new. So anyway, there's a historical bias in evolutionary biology against mechanism and in the direction of phenomenology. I have never been particularly fond of that bias. I have always been interested in [https://en.wikipedia.org/wiki/Mechanism_(biology) mechanism]. I'm interested in the phenomenology too, but I've always kept my foot in the door with respect to mechanism. And as an undergraduate, I took lots of mechanism classes. I took a development class. At the time, developmental biology was, in my opinion, a bit stuck. It is now unstuck in a very dramatic way. But anyway, I took a developmental biology class. I took some immunobiology. And anyway, I was armed with these things in an environment in evolutionary biology where most people were not; most people were in the phenomenology. And one day I happened to be in a seminar. Dick Alexander was running a seminar for graduate students, and a student was there who was very out of place. He was studying cancer, and he, on a lark, decided to take an evolution seminar that looked good to him in the catalog, and it wasn't right for him. And he gave a talk at some point, and his talk was on his work with cancer. And frankly, because all the other people in the room were evolutionarily oriented, nobody was really tracking what he was saying. But what he said struck me like a bolt of lightning. He said that in the realm of cancer research, people were looking at telomeres, which are these repetitive sequences at the ends of chromosomes. And they were toying with the possibility that the fact that these telomeres shorten every time a cell divides, that that is providing a resistance to tumor formation. Very straightforward—counter counts down, and that would prevent—


'''Eric:''' So just for the audience that maybe needs a tiny refresher, we're taught in general that DNA is a string of letters called nucleotides, A, C, T and G, and that, in general, three of those that are adjacent to each other form words called codons. And for every word there is an amino acid or an instruction to stop coding for amino acids. So this is the instruction tape that tells us how to string together amino acids into proteins to make machines, molecular machines. This is some weird different thing, where the region of DNA could be interpreted as coding for a protein, but in fact might be instead just counting how many nucleotides are at the end. So it comes across as a counter.  
'''Eric:''' So just for the audience that maybe needs a tiny refresher, we're taught in general that DNA is a string of letters called nucleotides, A, C, T and G, and that, in general, three of those that are adjacent to each other form words called codons. And for every word there is an amino acid or an instruction to stop coding for amino acids. So this is the instruction tape that tells us how to string together amino acids into proteins to make machines, molecular machines. This is some weird different thing, where the region of DNA could be interpreted as coding for a protein, but in fact might be instead just counting how many nucleotides are at the end. So it comes across as a counter.  
Line 573: Line 579:
(00:55:33)
(00:55:33)


'''Bret:''' It's a little better. It was known not to be a coding sequence. It wasn't a useful sequence. So what you had is a bunch of DNA at the ends of chromosomes that were just repetitive, and the length of the number of repeats varies. And the number of repeats correlates with basically how many times the cell can divide before it refuses. This being interpreted as a cancer prevention thing made perfect sense. But the reason it struck me like a bolt of lightning was that I was well aware of the existence of tumors and their implication in something entirely different. What they had been implicated in, as far as I was aware, was something called [https://en.wikipedia.org/wiki/Hayflick_limit Hayflick limits], which were the tendency of perfectly healthy, happy cells to grow and grow and grow and grow in a Petri dish, until they hit some number of divisions and then to stop without apparent dysfunction. So—
'''Bret:''' It's a little better. It was known not to be a coding sequence. It wasn't a useful sequence. So what you had is a bunch of DNA at the ends of chromosomes that were just repetitive, and the number of repeats varies, and the number of repeats correlates with basically how many times the cell can divide before it refuses. This being interpreted as a cancer prevention thing made perfect sense. But the reason it struck me like a bolt of lightning was that I was well aware of the existence of tumors and their implication in something entirely different. What they had been implicated in, as far as I was aware, was something called [https://en.wikipedia.org/wiki/Hayflick_limit Hayflick limits], which were the tendency of perfectly healthy, happy cells to grow and grow and grow and grow in a Petri dish, until they hit some number of divisions and then to stop without apparent dysfunction. So—


'''Eric:''' So this was the theory of [https://en.wikipedia.org/wiki/Leonard_Hayflick Leonard Hayflick]?  
'''Eric:''' So this was the theory of [https://en.wikipedia.org/wiki/Leonard_Hayflick Leonard Hayflick]?  


'''Bret:''' Yup. It was the discovery of Leonard Hayflick, who basically overturned the prior wisdom about cells, which was that they would grow indefinitely as long as you kept feeding them and making an environment that was conducive to division. So I don't exactly know why that result had been misunderstood at first. Maybe somebody had a cancerous cell line and so they got the wrong idea and it just spread, but Hayflick checked it and it turned out to be false. It turned out there was a number of cell divisions that healthy cells would go through, and then they'd stop. The mechanism was not obvious to Hayflick, but later it became clearer and clearer that the mechanism was these sequences at the ends of chromosomes which shorten each time the cell divides. And the implication was that, potentially, this was a cause of what we call [https://en.wikipedia.org/wiki/Senescence “senescence”], what in common parlance would often be called “aging”, the tendency to grow feeble and inefficient with age. If your cells are each in a cell line and that line has a fixed number of times that it can replace itself before it has to stop, then at some point your repair program starts to fail. And that repair program, failing across the body, looks like what you would expect aging—aging follows the pattern you would expect if cell lines one-by-one stopped being able to replace themselves. So—  
'''Bret:''' Yup. It was the discovery of Leonard Hayflick, who basically overturned the prior wisdom about cells, which was that they would grow indefinitely as long as you kept feeding them and making an environment that was conducive to division. So I don't exactly know why that result had been misunderstood at first. Maybe somebody had a cancerous cell line and so they got the wrong idea and it just spread, but Hayflick checked it and it turned out to be false. It turned out there was a number of cell divisions that healthy cells would go through, and then they'd stop. The mechanism was not obvious to Hayflick, but later it became clearer and clearer that the mechanism was these sequences at the ends of chromosomes which shorten each time the cell divides. And the implication was that, potentially, this was a cause of what we call [https://en.wikipedia.org/wiki/Senescence “senescence”], what in common parlance would often be called “aging”, the tendency to grow feeble and inefficient with age. If your cells are each in a cell line and that line has a fixed number of times that it can replace itself before it has to stop, then at some point your repair program starts to fail. And that repair program, failing across the body, looks like what you would expect aging [to look like]-aging follows the pattern you would expect if cell lines one-by-one stopped being able to replace themselves. So—  


'''Eric:''' We know that there's a special sort of a, I don't want to call it cell line cause you keep correcting me for every tiny mistake I make in speech. But, if we divide our body into two kinds of cells, soma and germ, where germ lines are that which has a hope of immortality through reproduction, then it's the [https://en.wikipedia.org/wiki/Somatic_cell somatic cells] that have finite limits on their ability to undergo mitosis and cellular repair and whatnot.
'''Eric:''' We know that there's a special sort of a, I don't want to call it cell line cause you keep correcting me for every tiny mistake I make in speech. But, if we divide our body into two kinds of cells, soma and germ, where germ lines are that which has a hope of immortality through reproduction, then it's the [https://en.wikipedia.org/wiki/Somatic_cell somatic cells] that have finite limits on their ability to undergo mitosis and cellular repair and whatnot.
Line 591: Line 597:
'''Eric:''' One of the greatest of modern—  
'''Eric:''' One of the greatest of modern—  


'''Bret:''' One of the greatest modern evolutionary biologists. I actually knew him a bit too. He is also now gone, unfortunately. But George Williams had laid out in a beautifully elegant paper, the evolutionary theory of senescence. It is an absolutely elegant argument that says that, in a lifetime there are, well, let's start somewhere else. A creature is built of parts and traits. It has a relatively small [https://en.wikipedia.org/wiki/Genome genome] and a relatively high complexity. At the time it was thought there might be 100,000 genes or something and you have maybe 30 trillion cells with a ton of complexity. In order to get that small number of genes to dictate how to produce a creature that complex, the genes are doing multiple things.  
'''Bret:''' One of the greatest modern evolutionary biologists. I actually knew him a bit too. He is also now gone, unfortunately. But George Williams had laid out, for in a beautifully elegant paper, the evolutionary theory of senescence. It is an absolutely elegant argument that says that in a lifetime there are, well, let's start somewhere else. A creature is built of parts and traits. It has a relatively small [https://en.wikipedia.org/wiki/Genome genome] and a relatively high complexity. At the time it was thought there might be 100,000 genes or something and you have maybe 30 trillion cells with a ton of complexity. In order to get that small number of genes to dictate how to produce a creature that complex, the genes are doing multiple things.  


William's point was when a gene has multiple effects, what we call a [https://en.wikipedia.org/wiki/Pleiotropy pleiotropy], those effects may be good or bad. If effects are good early in life—  
William's point was when a gene has multiple effects, what we call a [https://en.wikipedia.org/wiki/Pleiotropy pleiotropy], those effects may be good or bad. If effects are good early in life—  
Line 597: Line 603:
'''Eric:''' By good we mean contributing to fitness—  
'''Eric:''' By good we mean contributing to fitness—  


'''Bret:''' Fitness enhancing traits, at some cost late in life, then they will tend to be accumulated by selection. And the reason for that is because, well, there are two ways to think of it, really. If a negative trait occurs very late in life, then a large number of individuals who have the gene for that trait will not live long enough to experience the harm. So if it came bound to a positive thing early in life and you're dead before the late life harm accrues, you got away with it. Right? So William's point was, he was building on earlier work of Medawar, but let's skip that for the moment.
'''Bret:''' -fitness enhancing traits, [but] at some cost late in life, then they will tend to be accumulated by selection. And the reason for that is because, well, there are two ways to think of it, really. If a negative trait occurs very late in life, then a large number of individuals who have the gene for that trait will not live long enough to experience the harm. So if it came bound to a positive thing early in life and you're dead before the late life harm accrues, you got away with it. Right? So William's point was-he was building on earlier work of Medawar, but let's skip that for the moment-his point was, because of tradeoffs, you will have lots of traits that are good early and bad late. Selection sees the early traits much more clearly than it sees the late traits, and it prioritizes them because of the discounting that arises because so many individuals aren't around to experience the late-life harm, and if they are around to experience the late-life harm, a lot of their reproduction is behind them anyway. So they count less. Selection counts more early in life. And this timer starts at the moment of first reproduction, the usual moment of first reproduction for your species. So this was a beautiful hypothesis, and it was beautifully articulated with many predictions, which is the way really good work is done. And we knew, at the point that I was entering graduate school, we knew that the hypothesis was right. It was a theory.
 
His point was, because of tradeoffs, you will have lots of traits that are good early and bad late. Selection sees the early traits much more clearly than it sees the late traits, and it prioritizes them because of the discounting that arises because so many individuals aren't around to experience the late-life harm, and if they are around to experience the late-life harm, a lot of their reproduction is behind them anyway. So they count less. Selection counts more early in life. And this timer starts at the moment of first reproduction, the usual moment of first reproduction for your species. So this was a beautiful hypothesis, and it was beautifully articulated with many predictions, which is the way really good work is done. And we knew, at the point that I was entering graduate school, we knew that the hypothesis was right. It was a theory.


(01:01:36)
(01:01:36)
Line 607: Line 611:
'''Eric:''' The hypothesis is the [https://en.wikipedia.org/wiki/Antagonistic_pleiotropy_hypothesis Antagonistic Pleiotropy Hypothesis].
'''Eric:''' The hypothesis is the [https://en.wikipedia.org/wiki/Antagonistic_pleiotropy_hypothesis Antagonistic Pleiotropy Hypothesis].


'''Bret:''' The Antagonistic Pleiotropy Hypothesis for senescence. We knew that it was right because it predicted so many phenomena in nature that we could readily go out and measure. And this is again where the phenomenology versus mechanism comes in.  
'''Bret:''' The Antagonistic Pleiotropy Hypothesis for Senescence. We knew that it was right because it predicted so many phenomena in nature that we could readily go out and measure. And this is again where the phenomenology versus mechanism comes in.  


'''Eric:''' Okay.  
'''Eric:''' OK.


'''Bret:''' We know that creatures that are poisonous or have a shell that protects them or can fly away from danger, are disproportionately long-lived for their size. Small creatures tend to live shorter lives than large creatures. But if you can fly, then you're off the line of the other creatures of your size. So for example, there are small bats who have been recovered after 30 years in the wild. So creatures that have special protections have disproportionate longevity. This matches William's hypothesis, because it is their ability to fly away from danger that makes the likelihood of their experiencing late-life costs go up.  
'''Bret:''' We know that creatures that are poisonous or have a shell that protects them or can fly away from danger, are disproportionately long-lived for their size. Small creatures tend to live shorter lives than large creatures. But if you can fly, then you're off the line of the other creatures of your size. So for example, there are small bats who have been recovered after 30 years in the wild. So creatures that have special protections have disproportionate longevity. This matches William's hypothesis, because it is their ability to fly away from danger that makes the likelihood of their experiencing late-life costs go up.  
Line 615: Line 619:
'''Eric:''' Yep.  
'''Eric:''' Yep.  


'''Bret:''' So selection sees their late life more easily than it sees a small __?__ .
'''Bret:''' So selection sees their late life more easily than it sees a small [inaudible].


'''Eric:''' I just want to say something. This is a podcast. It's an unusual podcast and we can talk science and I'm thrilled, but we always have our colleagues in our minds when we're talking to a general audience and the colleagues are always in a “gotcha” mode. Well, you forgot about this. You didn't mention that. I'm even interjecting little bits because I want to make sure that you're immunized from all the bullshit that the academics…so I just want to make a general statement, which is-we can come back and get into any level of specificity that somebody wants to, if they want to take you down, I don't care. What I'd love to do is to tell the story with enough punch that people understand what happened.
'''Eric:''' I just want to say something. This is a podcast. It's an unusual podcast and we can talk science and I'm thrilled, but we always have our colleagues in our minds when we're talking to a general audience, and the colleagues are always in a “gotcha” mode. Well, you forgot about this. You didn't mention that. I'm even interjecting little bits because I want to make sure that you're immunized from all the bullshit that the academics… so, I just want to make a general statement, which is-we can come back and get into any level of specificity that somebody wants to, if they want to take you down, I don't care. What I'd love to do is to tell the story with enough punch that people understand what happened.


'''Bret:''' So we're about to jump into the meat of the matter. The theory of antagonistic pleiotropy was well established, but in four decades of research on the genome, nobody had found a gene that matched it, so that we knew that this explanation was right, but we couldn't find the genes that caused it. The mechanism was missing. So, anyway—
'''Bret:''' So we're about to jump into the meat of the matter. The theory of antagonistic pleiotropy was well established, but in four decades of research on the genome, nobody had found a gene that matched it, so that we knew that this explanation was right, but we couldn't find the genes that caused it. The mechanism was missing. So, anyway—
Line 629: Line 633:
'''Bret:''' Right. Now, I saw this instantly at the point I heard this talk, I raised my hand, and I tried to articulate what was so obvious in that moment, and I couldn't compel a single person in the room. They couldn't even understand what I was trying to say—
'''Bret:''' Right. Now, I saw this instantly at the point I heard this talk, I raised my hand, and I tried to articulate what was so obvious in that moment, and I couldn't compel a single person in the room. They couldn't even understand what I was trying to say—


'''Eric:''' Which is bizarre.  
'''Eric:''' -which is bizarre.  


'''Bret:''' It was bizarre. I mean Dick was in the room and you know, Dick was very broad-minded and I just couldn't make it clear.
'''Bret:''' It was bizarre. I mean Dick was in the room and you know, Dick was very broadminded and I just couldn't make it clear.


'''Eric:''' Look, let me just interject something, and you can correct me if I'm wrong, but my impression of it is that it was a very simple idea attended to by an outrageous amount of irrelevant complexity that had to be very carefully pried off of the central idea.
'''Eric:''' Look, let me just interject something, and you can correct me if I'm wrong, but my impression of it is that it was a very simple idea attended to by an outrageous amount of irrelevant complexity that had to be very carefully pried off of the central idea.
Line 637: Line 641:
(01:05:04)
(01:05:04)


'''Bret:''' Yeah, I think, I think that's well said. So anyway, I left the room feeling like I had just glimpsed something so important, kind of, you know, I wondered could it be right and I started to just do the first bit of library research to figure out whether somebody else knew what I knew or—
'''Bret:''' Yeah, I think, I think that's well said. So anyway, I left the room feeling like I had just glimpsed something so important-I wondered could it be right and I started to just do the first bit of library research to figure out whether somebody else knew what I knew or—


'''Eric:''' So I'm not even sure that you fully said it. I want to make sure that I'm even clear on it and I'm going to, I think I'm right, but correct me if I'm wrong. What you're saying is, “What if the Hayflick limit is a protection against dying from immortality at a cytological level,” that some cell gets a dream of immortality that it shouldn't have because, let's say, it's a somatic cell, and it says, “Okay, I just want to keep dividing and dividing and dividing.Nature knows how to do this, and that immortality, which sounds good at first, is actually called cancer. And so in computer science we would say, okay, you've introduced a recursion limit into a while loop or a for loop to make sure that you don't have a resource leak, which is what a tumor is.
'''Eric:''' So I'm not even sure that you fully said it. I want to make sure that I'm even clear on it-I think I'm right, but correct me if I'm wrong-What you're saying is, ‘What if the Hayflick Limit is a protection against dying from immortality at a cytological level?’-that some cell gets a dream of immortality that it shouldn't have, because let's say, it's a somatic cell, and it says, ‘OK, I just want to keep dividing and dividing and dividing.Nature knows how to do this, and that immortality, which sounds good at first, is actually called cancer. And so in computer science we would say, okay, you've introduced a recursion limit into a while loop or a for loop to make sure that you don't have a resource leak, which is what a tumor is.


'''Bret:''' Yeah, so let me say it this way. If you have a damage to a tissue-cut on your arm or something-the cells on both sides of that cut suddenly become aware that there is a problem, a gap, because they can't hear a neighbor on one side of them and their natural reaction is to start growing into the gap until they can hear a neighbor, which is the sign to stop. If you imagine that something like that is occurring in every tissue, or almost every tissue, the problem is that that means that every tissue in your body for which that story is about right, is in danger of having damage from radiation, or whatever, turn it deaf to its neighbors. A single cell that has turned deaf to its neighbors will suddenly start replicating, and if it is deaf to its neighbors, then there's no message that it's going to hear that's going to tell it to stop. So that thing, imagine any cell in your body just taking off and growing and growing and growing—
'''Bret:''' Yeah, so let me say it this way. If you have a damage to a tissue-cut on your arm or something-the cells on both sides of that cut suddenly become aware that there is a problem, a gap, because they can't hear a neighbor on one side of them and their natural reaction is to start growing into the gap until they can hear a neighbor, which is the sign to stop. If you imagine that something like that is occurring in every tissue, or almost every tissue, the problem is that that means that every tissue in your body for which that story is about right, is in danger of having damage from radiation, or whatever, turn it deaf to its neighbors. A single cell that has turned deaf to its neighbors will suddenly start replicating, and if it is deaf to its neighbors, then there's no message that it's going to hear that's going to tell it to stop. So that thing, imagine any cell in your body just taking off and growing and growing and growing—


'''Eric:''' Okay, this is terrifying. What you're saying to me is, that if I'm comprised of let's say 30 trillion cells, and I view them as each let's say subroutines, any subroutine that is not denucleated, right? Like this wouldn't happen in the lens of your eye because the nucleus has been removed, but any other reasonable cell is potentially your assassin, because its mitosis process might completely go rogue.
'''Eric:''' Okay, this is terrifying. What you're saying to me is, that if I'm comprised of let's say 30 trillion cells, and I view them as each-let's say subroutines-any subroutine that is not denucleated, right?-this wouldn't happen in the lens of your eye because the nucleus has been removed-but any other reasonable cell is potentially your assassin, because its mitosis process might completely go rogue.


'''Bret:''' It can run away.  
'''Bret:''' It can run away.  


'''Eric:''' Okay.  
'''Eric:''' OK.


'''Bret:''' And so the rather elegant and very simple idea is that there would be a hard limit so that any cell that had become damaged, so it started down this path, would just simply run into the number of cell divisions it was allowed in a lifetime and it would stop.  
'''Bret:''' And so the rather elegant and very simple idea is that there would be a hard limit… so that any cell that had become damaged so [that] it started down this path, would just simply run into the number of cell divisions it was allowed in a lifetime and it would stop.  


'''Eric:''' So like, the moles on my face that some of my less couth commenters love to talk about—
'''Eric:''' So the moles on my face that some of my less couth commenters love to talk about—


'''Bret:''' Yep.
'''Bret:''' Yep.
Line 657: Line 661:
(01:08:01)
(01:08:01)


'''Eric:''' Are effectively attempts to kill me that may have stopped. And that the perimeter where they stop is where the Hayflick limit took over and said, “This cell line must die so that the patient will live?
'''Eric:''' Are effectively attempts to kill me that may have stopped. And that the perimeter where they stop is where the Hayflick Limit took over and said, ‘This cell line must die so that the patient will live?


'''Bret:''' Yeah. The name I gave them was “prototumor,” and the idea is a prototumor is a patch of cells arrested at their Hayflick limit because they had become unregulated. If you go to the dermatologist and you say, “What do I look for?” You know, they tell you certain things to look for. So a round patch of cells that suddenly becomes irregular in shape?  Well that's what would happen if you took one of those cells and gave it a second mutation and it started growing again.  
'''Bret:''' Yeah. The name I gave them was “prototumor,” and the idea is a prototumor is a patch of cells arrested at their Hayflick Limit because they had become unregulated. If you go to the dermatologist and you say, “What do I look for?” You know, they tell you certain things to look for. So a round patch of cells that suddenly becomes irregular in shape?  Well that's what would happen if you took one of those cells and gave it a second mutation and it started growing again.  


'''Eric:''' Got it.  
'''Eric:''' Got it.  


'''Bret:''' Right. So anyway, the idea that a limit on cellular reproduction—
'''Bret:''' Right? So anyway, the idea that a limit on cellular reproduction—


'''Eric:''' Yep.  
'''Eric:''' Yep.  
Line 683: Line 687:
'''Bret:''' Right
'''Bret:''' Right


'''Eric:''' So it was like stem cells, versus germ, versus ...
'''Eric:''' So it was stem cells, versus germ, versus ...


'''Bret:''' So when I went into the literature, what I found was that people had played around in the neighborhood, but that there was a particular fact which blocked every attempt to make sense of what was going on. And the fact was that rodents were understood to have ultra long, hypervariable telomeres. And I didn't know what that meant at first, but the more I looked into this possibility, the more I realized that dozens of longstanding problems would be solved if my hypothesis was true, but that my hypothesis couldn't be true because basically mice have long telomeres in short lives. Why is that? And I banged my head on the table for a couple of weeks trying to figure out what was going on.  
'''Bret:''' So when I went into the literature, what I found was that people had played around in the neighborhood, but that there was a particular fact which blocked every attempt to make sense of what was going on. And the fact was that rodents were understood to have ultra long, hypervariable telomeres. And I didn't know what that meant at first, but the more I looked into this possibility, the more I realized that dozens of longstanding problems would be solved if my hypothesis was true, but that my hypothesis couldn't be true because basically mice have long telomeres in short lives. Why is that? And I banged my head on the table for a couple of weeks trying to figure out what was going on.  


'''Eric:''' Figuratively
'''Eric:''' Figuratively.


'''Bret:''' Yes, maybe even literally on occasion. But the question was-I began to wonder if there was something wrong with the idea that mice had long telomeres. Sometimes, like in Hayflick's case it turned out that a bunch of people were copying some wrong result, and so it seemed like a lot of people had seen it, but only one had. And I checked, was it true, that there was some-that everybody was parroting one study that said mice had long telomeres?  
'''Bret:''' Yes; maybe even literally on occasion. But the question was-I began to wonder if there was something wrong with the idea that mice had long telomeres. Sometimes, like in Hayflick's case it turned out that a bunch of people were copying some wrong result, and so it seemed like a lot of people had seen it, but only one had. And I checked, was it true, that there was some-that everybody was parroting one study that said mice had long telomeres?  


'''Eric:''' Right.
'''Eric:''' Right.


'''Bret:''' It turns out lots of people had tested it. Mice have long telomeres like 10 times the length of human telomeres. It just didn't fit. So finally, it occurred to me that it was possible that what was going on-I discovered something in trying to figure out what they meant by “mice”. Right? There's a lot of species of mice, but all the mice that we use in the lab, with rare exception, are from one genus, and often from a particular target species.  
'''Bret:''' It turns out lots of people had tested it. Mice have long telomeres-like 10 times the length of human telomeres. It just didn't fit. So finally, it occurred to me that it was possible that what was going on-I discovered something in trying to figure out what they meant by “mice”. Right? There's a lot of species of mice, but all the mice that we use in the lab, with rare exception, are from one genus, and often from a particular target species.  


'''Eric:''' So you were focused, if I recall correctly, on mus spretus  
'''Eric:''' So you were focused, if I recall correctly, on mus spretus?


'''Bret:''' Mus musculus, which is the common one. What shocked me was that it turned out all the mus musculus that were being used in labs across the country, and in many cases, farther afield than that, were coming from one place, which I had no idea. There was one—
'''Bret:''' Mus musculus, which is the common one. What shocked me was that it turned out all the mus musculus that were being used in labs across the country, and in many cases, farther afield than that, were coming from one place, which I had no idea. There was one—
Line 707: Line 711:
(01:12:04)
(01:12:04)


'''Bret:''' Right. These are model organisms. People were just using mice because mice were a convenient mammal, but they're all coming from one place, and it began to occur to me that that one place was not just a source of mice in the sense that we might think it, it was actually a selective environment that was impacting those mice. And when I dug deeper, it turned out that the mice had all-they were descendants of a long lineage that had lived in captivity under conditions at the [https://en.wikipedia.org/wiki/Jackson_Laboratory JAX Lab]. And at some point I realized that the most likely thing going on was that there was something about this environment that had wildly elongated the telomeres of these mice. And that was simultaneously an unbelievable idea, but the only one I could think of that made sense of everything I had seen. And so—
'''Bret:''' Right. These are model organisms. People were just using mice because mice were a convenient mammal, but they're all coming from one place, and it began to occur to me that that one place was not just a source of mice in the sense that we might think it, [but] it was actually a selective environment that was impacting those mice. And when I dug deeper, it turned out that the mice had all-they were descendants of a long lineage that had lived in captivity under conditions at the [https://en.wikipedia.org/wiki/Jackson_Laboratory JAX Lab]. And at some point I realized that the most likely thing going on was that there was something about this environment that had wildly elongated the telomeres of these mice. And that was simultaneously an unbelievable idea, but the only one I could think of that made sense of everything I had seen. And so—
 
'''Eric:''' Well, it's unbelievable because the consequences, I mean, look-I have not even heard whether anyone has said, “Yeah, we did that, we screwed that up.” But it is your favorite model organism for mammalian trials being screwed up by a central facility. Also, there's this weird thing where medical people very often stop taking into account evolutionary theory, because they treat that as “Well, that's that class I took in college or the beginning of graduate school.”
 


'''Eric:''' Well, it's unbelievable because the consequences, I mean, look-I have not even heard whether anyone has said, “Yeah, we did that, we screwed that up.” But it is, like, your favorite model organism for mammalian trials being screwed up by a central facility. Because also there's this weird thing where medical people very often stop taking into account evolutionary theory because they treat that as “Well, that's that class I took in college or the beginning of graduate school.”


'''Bret:''' Right. So I began to focus on this question and I did something that was the right thing to do, but I did it in a way I will forever regret. I found somebody who was represented in the literature, who I regarded as very well versed. They made sense to me, their papers. Her name was [https://en.wikipedia.org/wiki/Carol_W._Greider Carol Greider]. Carol Greider is now a Nobel Laureate. She was not at the time. She was the co-discoverer of the enzyme [https://en.wikipedia.org/wiki/Telomerase telomerase], which is the enzyme that elongates telomeres, when that occurs—
'''Bret:''' Right. So I began to focus on this question and I did something that was the right thing to do, but I did it in a way I will forever regret. I found somebody who was represented in the literature, who I regarded as very well versed. They made sense to me, their papers. Her name was [https://en.wikipedia.org/wiki/Carol_W._Greider Carol Greider]. Carol Greider is now a Nobel Laureate. She was not at the time. She was the co-discoverer of the enzyme [https://en.wikipedia.org/wiki/Telomerase telomerase], which is the enzyme that elongates telomeres, when that occurs—
Line 717: Line 723:
'''Eric:''' With the famous and co-Nobel recipient—she was the student of [https://en.wikipedia.org/wiki/Elizabeth_Blackburn Elizabeth Blackburn].
'''Eric:''' With the famous and co-Nobel recipient—she was the student of [https://en.wikipedia.org/wiki/Elizabeth_Blackburn Elizabeth Blackburn].


'''Bret:''' [https://en.wikipedia.org/wiki/Elizabeth_Blackburn Elizabeth Blackburn]. Exactly. She was her student and they shared the Nobel prize with [https://en.wikipedia.org/wiki/Jack_W._Szostak Szostak]. In any case, her work seemed good to me. I called her up, cold, you know, I went into the Insect Division Office, and I sat down at the phone. I called her, I said, Carol, you don't know me. I'm a graduate student at Michigan. I'm an evolutionary biologist. I'm racking my brains trying to understand something. Can you tell me, is it possible that mice don't have ultra long telomeres? That it's only laboratory mice that do? And she said, huh. That’s really interesting. I'm pretty sure that mice have long telomeres universally. But it is odd that if you order mus spretus instead of mus musculus and you order from European suppliers, the lengths are very different than what you get if you order mus musculus from the JAX Lab. I said, Whoa.
'''Bret:''' [https://en.wikipedia.org/wiki/Elizabeth_Blackburn Elizabeth Blackburn]. Exactly. She was her student and they shared the Nobel prize with [https://en.wikipedia.org/wiki/Jack_W._Szostak Szostak]. In any case, her work seemed good to me. I called her up, cold, you know, I went into the Insect Division Office, and I sat down at the phone. I called her, I said, Carol, you don't know me. I'm a graduate student at Michigan. I'm an evolutionary biologist. I'm racking my brains trying to understand something. Can you tell me, is it possible that mice don't have ultra long telomeres? That it's only laboratory mice that do? And she said huh. That’s really interesting. I'm pretty sure that mice have long telomeres universally. But it is odd that if you order mus spretus instead of mus musculus and you order from European suppliers, the lengths are very different than what you get if you order mus musculus from the JAX Lab. I said, whoa.


And she said, yeah. That’s really interesting. And then she said, I can't remember if it was the same phone call or if we had a second phone call, but she said she was gonna put her student, her graduate student, [https://biology.mit.edu/profile/michael-t-hemann/ Mike Hemann], who I think is now at MIT, on the project, and he was going to do a little work to figure out whether there was anything to this. And Mike did some work. They sourced some different strains of mice that were, they were actually not wild mice. Wild mice would have been the right test, but she couldn't get wild mice for obvious reasons.  
And she said, yeah. That’s really interesting. And then she said-I can't remember if it was the same phone call or if we had a second phone call, but she said she was going to put her student, her graduate student, [https://biology.mit.edu/profile/michael-t-hemann/ Mike Hemann], who I think is now at MIT, on the project, and he was going to do a little work to figure out whether there was anything to this. And Mike did some work. They sourced some different strains of mice that were actually not wild mice. Wild mice would have been the right test, but she couldn't get wild mice for obvious reasons.  


'''Eric:''' You’d have to go out into the woods.
'''Eric:''' You’d have to go out into the woods.


'''Bret:''' Right, exactly. And so she got several different strains of mice that had just been in captivity much less time. She actually got one strain of mice that was treated very differently in captivity. But nevermind. She put her graduate student on it, and he measured their telomere lengths. And I get this excited email. [https://biology.mit.edu/profile/michael-t-hemann/ Mike Hemann] sends me any email that says effectively, “Whoa! The hypothesis is true, mice have short telomeres!Right? Now—  
'''Bret:''' Right, exactly. And so she got several different strains of mice that had just been in captivity much less time. She actually got one strain of mice that was treated very differently in captivity-but nevermind. She put her graduate student on it, and he measured their telomere lengths. And I get this excited email. [https://biology.mit.edu/profile/michael-t-hemann/ Mike Hemann] sends me any email that says, effectively, whoa! The hypothesis is true, mice have short telomeres!
 
Right? Now—  


'''Eric:''' I'm sorry, this is like as close to a ‘who dunnit’ discovery-J'accuse-the mice, you know, I remember, you were over the moon.  
'''Eric:''' I'm sorry, this is as close to a ‘who dunnit’ discovery-J'accuse-the mice-I remember, you were over the moon.  


'''Bret:''' I still am! I still can look at this email and it is the moment at which I realized, A: there's no way I'm kidding myself about how well I understand this.
'''Bret:''' I still am! I still can look at this email and it is the moment at which I realized, A: there's no way I'm kidding myself about how well I understand this.
Line 739: Line 747:
'''Eric:''' No, when you get this email.
'''Eric:''' No, when you get this email.


'''Bret:''' When I got that email it was 1999? 98? Something like that?
'''Bret:''' When I got that email it was 1999? ‘98? Something like that?


'''Eric:''' Okay. So over 20 years ago.  
'''Eric:''' Okay. So over 20 years ago.  
Line 745: Line 753:
'''Bret:''' Yeah. So I get this email, and—
'''Bret:''' Yeah. So I get this email, and—


'''Eric:''' By the way, that puts you at about 30. You're at the beginning of your career, and you—in this story, you've just predicted that—
'''Eric:''' By the way, that puts you at about 30. You're at the beginning of your career, and you’ve-in this story, you've just predicted that—


'''Bret:''' It's a stunning coup for a graduate student. And, it wasn't in my advisor’s wheelhouse, so it was clearly my own work. And, I mean, Dick was great about not blurring those things, but—
'''Bret:''' It's a stunning coup for a graduate student. And, it wasn't in my advisor’s wheelhouse, so it was clearly my own work. I mean, Dick was great about not blurring those things, but—


'''Eric:''' Okay, either you are a dirty dog liar—  
'''Eric:''' Okay, either you are a dirty dog liar—  
Line 799: Line 807:
'''Eric:''' Got it.  
'''Eric:''' Got it.  


'''Bret:''' Okay, so let me clear up why the breeding protocol—and I should say, that-It is the breeding protocol that is causing this? That part, I would say, is still a hypothesis. It has not been directly tested by anybody; but, what I would say is that many hypotheses were tested in the aftermath of the discovery-that lab mice have bizarrely long telomeres, and wild mice don’t-and no other hypothesis has stood up to scrutiny. So it is the last hypothesis standing and I'm all but certain that it will turn out to be true.  
'''Bret:''' Okay, so let me clear up why the breeding protocol—and I should say, that it is the breeding protocol that is causing this-that part, I would say, is still a hypothesis. It has not been directly tested by anybody; but, what I would say is [that] many hypotheses were tested in the aftermath of the discovery-that lab mice have bizarrely long telomeres, and wild mice don’t-and no other hypothesis has stood up to scrutiny. So it is the last hypothesis standing and I'm all but certain that it will turn out to be true.  


'''Eric:''' Yeah.  
'''Eric:''' Yeah.  
Line 813: Line 821:
'''Bret:''' When you throw them out for breeding purposes at eight months of age, you are increasing the importance of their early life breeding, and you are discounting anything related to their ability to fend off cancer because they don't live long enough in that period of time to get cancers that kill them. And so what has happened, according to this hypothesis, is that the mice that have longer telomeres have driven out the other animals from the colony. The trait of having long telomeres has swept through the colony and the telomeres have been elongated to an absurd degree, creating animals that do all die of cancer. And interestingly enough, another thing that's evident from the literature is that if you look at their tissues, their tissues do not age in the way that a normal mammal’s tissues age. They remain young.  
'''Bret:''' When you throw them out for breeding purposes at eight months of age, you are increasing the importance of their early life breeding, and you are discounting anything related to their ability to fend off cancer because they don't live long enough in that period of time to get cancers that kill them. And so what has happened, according to this hypothesis, is that the mice that have longer telomeres have driven out the other animals from the colony. The trait of having long telomeres has swept through the colony and the telomeres have been elongated to an absurd degree, creating animals that do all die of cancer. And interestingly enough, another thing that's evident from the literature is that if you look at their tissues, their tissues do not age in the way that a normal mammal’s tissues age. They remain young.  


'''Eric:''' So there's one aspect of aging, but that there's a far darker interpretation of what you've just said, if I'm understanding you—correct me, I’ve never taken a class in biology, but I lived this adventure with you—those tissues have, at a histological level, the level of how cells are organized, the possibility of radical histological repair.  
'''Eric:''' So there's one aspect of aging,-there's a far darker interpretation of what you've just said, if I'm understanding you—correct me, I’ve never taken a class in biology, but I lived this adventure with you—those tissues have, at a histological level, the level of how cells are organized, the possibility of radical histological repair.  


'''Bret:''' Yes; radical, effectively indefinite capacity to repair, which is going to come back in this story in the worst possible way. So—
'''Bret:''' Yes; radical, effectively indefinite capacity to repair, which is going to come back in this story in the worst possible way. So—


'''Eric:''' This is like a-I mean, I just forget how great of a—
'''Eric:''' This is-I just forget how great of a—


'''Bret:''' Me too, I go years sometimes without thinking deeply about it.
'''Bret:''' Me too, I go years sometimes without thinking deeply about it.


'''Eric:''' Without telling the story. Alright.
'''Eric:''' -without telling the story. Alright.


(01:23:06)
(01:23:06)


'''Bret:''' Yeah. Okay. So the story now gets kind of ugly. I recognize I've got all the pieces of the puzzle necessary to tell the story correctly. I have taken on a coauthor, we've found the literature necessary to do it in proper scientific form.  
'''Bret:''' Yeah. Okay. So the story now gets kind of ugly. I recognize I've got all the pieces of the puzzle necessary to tell the story correctly. I have taken on a coauthor; we've found the literature necessary to do it in proper scientific form.  


'''Eric:''' This came from you, but I want to mention your coauthor’s name.  
'''Eric:''' This came from you, but I want to mention your coauthor’s name.  
Line 835: Line 843:
'''Bret:''' And Debbie was an excellent coauthor, strong contributor to the paper. Anyway, we put together-over the course of a year, I took a break from, effectively, my real dissertation work, and wrote-a paper. Dick thought it was a fantastic paper. He was blown away by it—
'''Bret:''' And Debbie was an excellent coauthor, strong contributor to the paper. Anyway, we put together-over the course of a year, I took a break from, effectively, my real dissertation work, and wrote-a paper. Dick thought it was a fantastic paper. He was blown away by it—


'''Eric:''' Well I remember the revisions, and I remember this was like, I mean, if I think about what's on the line, like this combines one of these freak situations where you're using evolutionary theory to predict something, and in this case it's at the level of molecular biology, so with Darwin's orchid it's a tongue, and with Dick's thing, its behavior in naked mole rats. This thing is actually at a molecular level, and, it couldn't be more important if mice are going to be the major system in which we are going to test drugs, which are highly sensitive to what? Histological repair.
'''Eric:''' Well I remember the revisions, and if I think about what's on the line, this combines one of these freak situations where you're using evolutionary theory to predict something. And in this case it's at the level of molecular biology. So, with Darwin's orchid it's a tongue, and with Dick's thing, its behavior in naked mole rats. This thing is actually at a molecular level, and it couldn't be more important if mice are going to be the major system in which we are going to test drugs, which are highly sensitive to what? Histological repair.


'''Bret:''' Yup. It's so profound on several different levels that I'm super energized about getting this into the world. It's transformative. Dick looks at the paper, he says, “This is fantastic.” He puts me through the ringer to get it really tight. We get it tight. We send it to George Williams, the—
'''Bret:''' Yep. It's so profound on several different levels that I'm super energized about getting this into the world. It's transformative. Dick looks at the paper, he says, “This is fantastic.” He puts me through the ringer to get it really tight. We get it tight. We send it to George Williams, the—


'''Eric:''' The number one guy in the world.
'''Eric:''' The number one guy in the world.
Line 843: Line 851:
'''Bret:''' The number one senescence guy at the evolutionary level in the world, and he writes a beautiful recommendation letter for this piece. We're going to send it to Nature. George Williams tells Nature, you need to take this piece very seriously. We send it to Nature and they send it back with one of their absurd form letters that says that “The nature of the article is such that it's probably—
'''Bret:''' The number one senescence guy at the evolutionary level in the world, and he writes a beautiful recommendation letter for this piece. We're going to send it to Nature. George Williams tells Nature, you need to take this piece very seriously. We send it to Nature and they send it back with one of their absurd form letters that says that “The nature of the article is such that it's probably—


'''Eric:''' Of limited interest—
'''Eric:''' -of limited interest—


'''Bret:''' -to their readers. And we're, you know, I mean, we had a good laugh about that. You know, it's cancer, it's senescence—
'''Bret:''' -to their readers. And we're, you know, we had a good laugh about that. You know, it's cancer, it's senescence—


(01:25:10)
(01:25:10)


'''Eric:''' Dude, it's so bad. Like, this is a response that indicates either malfeasance, or an Eliza program, or the janitor ended up responding who didn't know any bio—
'''Eric:''' Dude, it's so bad. This is a response that indicates either malfeasance, or an Eliza program, or the janitor ended up responding who didn't know any bio—


'''Bret:''' It’s the craziest thing, and you know, the cherry on top is that they're turning down George Williams’ recommendation? Like, how cra—do they know who he is? Like, what? Where?
'''Bret:''' It’s the craziest thing, and the cherry on top is that they're turning down George Williams’ recommendation? Like, how crazy-do they know who he is? Like, what? Where?


'''Eric:''' On what planet?  
'''Eric:''' On what planet?  
Line 859: Line 867:
'''Eric:''' It was her lab that made the confirmation.  
'''Eric:''' It was her lab that made the confirmation.  


'''Bret:''' Yeah. And I, oh, another thing I forgot, I asked her at some point, something that now rings in my ears—I asked her, Carol, you've now got this result about, no, actually lab mice have long telomeres, but wild mice have short telomeres. That's a big result.  
'''Bret:''' Yeah. And oh, another thing I forgot-I asked her at some point, something that now rings in my ears—I asked her, Carol, you've now got this result- no, actually lab mice have long telomeres, but wild mice have short telomeres. That's a big result.  


'''Eric:''' That’s a hell of a delta.  
'''Eric:''' That’s a hell of a delta.  
Line 871: Line 879:
'''Eric:''' I'll be honest, I'm 54 and I don't quite understand it myself.  
'''Eric:''' I'll be honest, I'm 54 and I don't quite understand it myself.  


'''Bret:''' Well, it's so heartbreaking. What she has effectively done is decided, “I could publish this result”
'''Bret:''' Well, it's so heartbreaking. What she has effectively done is decided ‘I could publish this result-‘


'''Eric:''' And then everyone would have it.
'''Eric:''' -and then everyone would have it-


'''Bret:''' It would be huge, but then I'm on a level playing field with everybody else. If I don't publish this result—
'''Bret:''' ‘-it would be huge, but then I'm on a level playing field with everybody else. If I don't publish this result—‘


(01:27:16)
(01:27:16)


'''Eric:''' I have a stream of papers I can get at.
'''Eric:''' -I have a stream of papers I can get at.


'''Bret:''' Then I can start predicting other results. Nobody will know how I am doing that thing. I will look like a super genius. And so, holding it “in house” is a mechanism for a whole slew of papers.
'''Bret:''' ‘-then I can start predicting other results. Nobody will know how I am doing that thing. I will look like a super genius.And so, holding it [italics]in house[italics] is a mechanism for a whole slew of papers.


'''Eric:''' to be, to be 100. You can afford to bend over backwards and not make inferences. Let's say the following, holding it in house is a seemingly inexplicable decision in science, but for the fact that it fits at least one story of this kind, which is that it is consistent with wishing to publish a stream, rather than the source of the information that would allow you—so you can either do one discovery or you can do a stream of predictions and that makes a certain amount of sense, given the ruthlessly competitive grant-winning environment. And we don't know exactly what happened, but there is no world that I know of in which you're allowed to hold back that kind of information, because, in part, of what's on the line.  
'''Eric:''' -to be, to be 100%-you can afford to bend over backwards and not make inferences. Let's say the following: Holding it [italics]in house[italics] is a seemingly inexplicable decision in science, but for the fact that it fits at least one story of this kind, which is that it is consistent with wishing to publish a stream, rather than the source of the information that would allow you—so you can either do one discovery or you can do a stream of predictions, and that makes a certain amount of sense, given the ruthlessly competitive grant-winning environment. And we don't know exactly what happened, but there is no world that I know of in which you're allowed to hold back that kind of information because, in part, of what's on the line.  


'''Bret:''' Right. So—
'''Bret:''' Right. So—
Line 893: Line 901:
'''Eric:''' Because these mice are used for medical testing.  
'''Eric:''' Because these mice are used for medical testing.  


'''Bret:''' Not even that. It's medical testing, but it's also all of the science relative, at least, to cancer, senescence, wound healing—all of the science that is stacked on these mice that is contingent on their function relative to their tiers is all compromised. You're letting year after year of this stuff accumulate. It's malpractice at an incredible level. So, I don't know that she has turned on me, but I call her up, and I say, “Carol, we are stunned to find that our paper was turned away without review from Nature—“
'''Bret:''' Not even that. It's medical testing, but it's also all of the science relative, at least, to cancer, senescence, wound healing—all of the science that is stacked on these mice that is contingent on their function relative to their telomeres is all compromised. You're letting year after year of this stuff accumulate. It's malpractice at an incredible level. So, [at this point] I don't know that she has turned on me, but I call her up, and I say, “Carol, we are stunned to find that our paper was turned away without review from Nature—“


'''Eric:''' Without review.
'''Eric:''' -without review.


'''Bret:''' Without review. We need your help. Can I send you the paper and have you look at it? And she says yes. And I sent her the paper and she sends back the paper with an unbelievable number of intense criticisms that are not sensible. She pans the paper, does not believe a word of it—  
'''Bret:''' -without review. We need your help. Can I send you the paper and have you look at it? And she says yes. And I send her the paper and she sends back the paper with an unbelievable number of intense criticisms that are not sensible. She pans the paper, does not believe a word of it—  


'''Eric:''' Do you still have that copy?
'''Eric:''' Do you still have that copy?


'''Bret:''' I have that paper, I have that paper with her handwriting. I believe I also have the FedEx envelope in which she sent it to me. But she hates the paper, and I have now forgotten a bit of the sequence. But as I am attempting to fix this up for another journal—oh, here's a, sorry, I hate to tangle this story, but it's important to get it right.
'''Bret:''' I have that paper, I have that paper with her handwriting. I believe I also have the FedEx envelope in which she sent it to me. But-she hates the paper, and I have now forgotten a bit of the sequence. But as I am attempting to fix this up for another journal—oh, here's a, sorry, I hate to tangle this story, but it's important to get it right.


'''Eric:''' No but you haven’t told this in enough-
'''Eric:''' No but you haven’t told this in enough-


'''Bret:''' I haven't told it in a very long time. After the rejection from nature, after Carol has seen the paper, and said it's cruddy, I get a letter I don't expect from a journal I don't—I know it exists, but I'm not super familiar with it, Experimental Gerontology. Experimental Gerontology says, “We are the editors of Experimental Gerentology. We have heard a rumor of your work. We're very interested. Would you be willing to submit a version to our journal?” and, oh, this is happening prior to Carol looking at my paper and panning it.  
'''Bret:''' I haven't told it in a very long time. After the rejection from nature, after Carol has seen the paper, and said it's cruddy, I get a letter I don't expect from a journal I don't—I know it exists, but I'm not super familiar with it: Experimental Gerontology. Experimental Gerontology says, we are the editors of Experimental Gerentology; we have heard a rumor of your work; we’re very interested; would you be willing to submit a version to our journal?
 
This is happening prior to Carol looking at my paper and panning it.  


'''Eric:''' So the only way they would have known about this would have been from Nature or from Dick, or—
'''Eric:''' So the only way they would have known about this would have been from Nature or from Dick, or—


'''Bret:''' I'm pretty sure I know, based on what they-again, I was too young to sort out really what they were saying, but they indicate that they're fans of antagonistic pleiotropy, so what happened was George Williams, having heard that it got rejected, contacted some friends of his and was like, you should really take a look at this. So I begin the process of revising it. I've shown it to Carol, she's panned it. I send the revised version to Experimental Gerentology. They send it out for review. As you know, review is blind. You don't know who your reviewers are, but you can often tell who they are. It's not as obscure—  
'''Bret:''' I'm pretty sure I know, based on what they-again, I was too young to sort out really what they were saying, but they indicate that they're fans of antagonistic pleiotropy, right? So what happened was George Williams, having heard that it got rejected, contacted some friends of his and [said] you should really take a look at this. So, I begin the process of revising it. I've shown it to Carol; she's panned it. I send the revised version to Experimental Gerentology; they send it out for review. As you know, review is blind. You don't know who your reviewers are, but you can often tell who they are. It's not as obscure—  


'''Eric:''' -if it’s a small field.
'''Eric:''' -if it’s a small field.
Line 925: Line 935:
'''Bret:''' No, I can't do it here, but I could have then—
'''Bret:''' No, I can't do it here, but I could have then—


'''Eric:''' No, okay?
'''Eric:''' No, OK?


'''Bret:''' But I didn't know what to do because she was in line for a Nobel Prize, that was well understood. I didn't want to accuse a leading light of the field of-  
'''Bret:''' But I didn't know what to do because she was in line for a Nobel Prize, that was well understood. I didn't want to accuse a leading light of the field of-  
Line 931: Line 941:
'''Eric:''' Okay, this is exactly why I got angry with the beginning of the podcast, you moron. No, no offense. You were in line for a Nobel Prize. You didn't-I mean-I'm sorry. There is an aspect of this about giving away your power, before you’ve even accumulated—you don't even have a PhD at this time.
'''Eric:''' Okay, this is exactly why I got angry with the beginning of the podcast, you moron. No, no offense. You were in line for a Nobel Prize. You didn't-I mean-I'm sorry. There is an aspect of this about giving away your power, before you’ve even accumulated—you don't even have a PhD at this time.


'''Bret:''' I'm just saying, at the time, if you mentioned her name, people would say, “Oh yeah, her Nobel Prize is one of these years.Right? So my point was, I was in the awkward position—I didn't understand what I was supposed to do. I didn't want to send back a review that said, “I don't know who the person is who reviewed this, but they don't understand the material, and all of their critiques suck,because I didn't want to accuse somebody who was that powerful of not getting it.
'''Bret:''' I'm just saying, at the time, if you mentioned her name, people would say oh, yeah, her Nobel Prize is one of these years.
 
Right? So my point was, I was in the awkward position-I didn't understand what I was supposed to do-I didn't want to send back a review that said, ‘I don't know who the person is who reviewed this, but they don't understand the material, and all of their critiques suck,because I didn't want to accuse somebody who was that powerful of not ‘getting it.


'''Eric:''' I mean, here's the problem. What do you do? You don't actually have evidence in the hard form where like you have got videotape, but on the other hand, these are small worlds. This, all of this is preposterous.
'''Eric:''' I mean, here's the problem. What do you do? You don't actually have evidence in the hard form where you have got [sic] videotape, but on the other hand, these are small worlds. This, all of this is preposterous.


'''Bret:''' Right. So I sit on the review for too long, not knowing what to—
'''Bret:''' Right. So I sit on the review for too long, not knowing what to—


'''Eric:''' Well you don't know how to play the game!
'''Eric:''' -well, you don't know how to play the game!


'''Bret:''' I don't know how to handle it.  
'''Bret:''' I don't know how to handle it.  


'''Eric:''' I'm sorry, but, like, I had no advisor? Your advisor was not equipped for the modern era.  
'''Eric:''' I'm sorry, but, “I had no advisor?” -your advisor was not equipped for the modern era.  


'''Bret:''' He wasn't equipped for the modern era. He wasn't equipped for molecular biology.  
'''Bret:''' He wasn't equipped for the modern era. He wasn't equipped for molecular biology.  
Line 947: Line 959:
'''Eric:''' That's true.  
'''Eric:''' That's true.  


'''Bret:''' I finally settle on a strategy that I can live with and I send back a note. I send back the review and my note says, “I don't know why, but this entire list of critiques is not high quality. If you would like to point me to any of the critiques in this list that you would like me to address, I am more than happy to do it, but I don't think it makes sense to address the entire list,” and as I recall it, I hit send on the email, and within minutes, maybe it was an hour, I got back a response: “Your paper has been accepted for publication,” which blew me away because I—
'''Bret:''' I finally settle on a strategy that I can live with, and I send back a note. I send back the review, and my note says, ‘I don't know why, but this entire list of critiques is not high quality. If you would like to point me to any of the critiques in this list that you would like me to address, I am more than happy to do it, but I don't think it makes sense to address the entire list.’
 
And as I recall it, I hit send on the email, and within minutes, maybe it was an hour, I got back a response: “Your paper has been accepted for publication.-which blew me away because I—


'''Eric:''' It makes no sense according to regular protocols.  
'''Eric:''' It makes no sense according to regular protocols.  


'''Bret:''' Right. It makes no sense, because, clearly, they're supposed to send it out for review. The reviewer is supposed to say whether it's supposed to get published. The reviewer said it shouldn't be published. I said, “I refuse to address these critiques unless you ask me to.The editors have overridden the reviewer. They understood the reviews were cruddy. They needed me to say that in order to justify the move that they wanted to make. They knew the paper was good and the review was crap. So they effectively overrode normal peer review. Was my paper peer reviewed? Well, it was by the editors who were experts.
'''Bret:''' Right. It makes no sense, because, clearly, they're supposed to send it out for review. The reviewer is supposed to say whether it's supposed to get published. The reviewer said it shouldn't be published. I said, ‘I refuse to address these critiques unless you ask me to.The editors have overridden the reviewer. They understood the reviews were cruddy. They needed me to say that, in order to justify the move that they wanted to make. They knew the paper was good and the review was crap. So they effectively overrode normal peer review. Was my paper peer reviewed? Well, it was-by the editors, who were experts.


(01:35:28)
(01:35:28)


'''Eric:''' Let me jump in. Peer review is a cancer from outer space. It came from the biomedical community, it invaded science. The old system, because—I have to say this because many people who are now professional scientists have an idea that peer review has always been in our literature and it absolutely motherfucking has not.
'''Eric:''' Let me jump in. Peer review is a cancer from outer space; it came from the biomedical community; it invaded science. The old system-I have to say this because many people who are now professional scientists have an idea that peer review has always been in our literature and it absolutely motherfucking has not-


'''Bret:''' Right.
'''Bret:''' Right.


'''Eric:''' Okay? It used to be that the editor of a journal took responsibility for the quality of the journal, which is why we had things like Nature crop up in the first place, because they had courageous, knowledgeable, forward thinking editors. And so I just want to be very clear, because there's a mind virus out there that says “peer review is the sine qua non of scientific excellence, yada, yada, yada, bullshit, bullshit, bullshit”. And if you don't believe me, go back and learn that this is a recent invasive problem in the sciences.
'''Eric:''' OK? -It used to be that the editor of a journal took responsibility for the quality of the journal, which is why we had things like Nature crop up in the first place, because they had courageous, knowledgeable, forward thinking editors. And so I just want to be very clear, because there's a mind virus out there that says ‘peer review is the [italics]sine qua non[italics] of scientific excellence, yada, yada, yada, bullshit, bullshit, bullshit’. And if you don't believe me, go back and learn that this is a recent invasive problem in the sciences.


'''Bret:''' Recent invasive problem that has no justification for existing in light of the fact that—
'''Bret:''' Recent invasive problem that has no justification for existing in light of the fact that—


'''Eric:''' Well, no, not only does it have no justification for existing. When Watson and Crick did the double helix, and this is the cleanest example we have, the paper was agreed should not be sent out for review because anyone who is competent would understand immediately what its implications were. There are reasons that great work cannot be peer reviewed. Furthermore, you have entire fields that are existing now with electronic archives that are not peer reviewed. Peer review is not peer review. It sounds like peer review. It is peer injunction. It is the ability for your peers to keep the world from learning about your work.
'''Eric:''' Well, not only does it have no justification for existing. When Watson and Crick did the double helix, and this is the cleanest example we have, the paper, [it] was agreed, should not be sent out for review because anyone who is competent would understand immediately what its implications were. There are reasons that great work cannot be peer reviewed. Furthermore, you have entire fields that are existing now with electronic archives that are not peer reviewed. Peer review is not peer review. It sounds like peer review. It is peer injunction. It is the ability for your peers to keep the world from learning about your work.


'''Bret:''' Keep the world from learning about your work—
'''Bret:''' Keep the world from learning about your work—
Line 987: Line 1,001:
'''Eric:''' All right. Then the Experimental Gerontology paper, what is it called?  
'''Eric:''' All right. Then the Experimental Gerontology paper, what is it called?  


'''Bret:''' “The Reserve Capacity Hypothesis,” which is a much less catchy title, but, nonetheless, the paper-I'm very proud of how it's written. People read it who were not expert, could understand it. The abstract is extremely clear, and it ends with the clear point that, because we have unearthed, we have predicted, and Carol Greider has shown, that wild mice telomeres are short, and the telomeres had been elongated by captivity, that there is a clear danger that the mice we are using for drug safety testing are biased in an egregious way. And the bias would look like this: a mouse that has very long telomeres has an indefinitely large capacity to replace damaged tissue, and, it has a vulnerability to cancer that is preternaturally high. So, we may be overrating—if we use these mice, we may be overrating the danger of causing cancer, and vastly underrating the danger of toxicity. And, in fact, one of the things—so, the point was you give a mouse who's got an effectively infinite capacity to replace its tissues, a toxin, and either the toxin is so deadly that it dies right away, but if it doesn't die right away, it just eats up the insult. So those animals would lead us to release drugs—  
'''Bret:''' “The Reserve Capacity Hypothesis,” which is a much less catchy title, but, nonetheless-the paper-I'm very proud of how it's written. People read it who were not expert, [and] could understand it. The abstract is extremely clear, and it ends with the clear point that, because we have unearthed, we have predicted, and Carol Greider has shown, that wild mice telomeres are short, and the telomeres had been elongated by captivity, that there is a clear danger that the mice we are using for drug safety testing are biased in an egregious way. And the bias would look like this: a mouse that has very long telomeres has an indefinitely large capacity to replace damaged tissue, and, it has a vulnerability to cancer that is preternaturally high. So, we may be overrating—if we use these mice, we may be overrating-the danger of causing cancer, and vastly underrating the danger of toxicity. So, you give a [lab]mouse-who's got an effectively infinite capacity to replace its tissues-a toxin, and either the toxin is so deadly that it dies right away, but if it doesn't die right away, it just eats up the insult. So those animals would lead us to release drugs—  


'''Eric:''' By insult, what you mean is cellular necrosis?  
'''Eric:''' By insult, what you mean is cellular necrosis?  
Line 1,015: Line 1,029:
(01:40:36)
(01:40:36)


'''Eric:''' Let's just, I want to back up because I think this is a really important part of the story. What you're saying is that if you take an organism that has an expected, let's say, 40 year lifetime, it's very expensive timewise to say, “We ran this experiment and found that there was no immediate damage that was visible, but towards the very end of their lives we saw a marked increase in morbidity,or-
'''Eric:''' I want to back up because I think this is a really important part of the story. What you're saying is that if you take an organism that has an expected, let's say, 40 year lifetime, it's very expensive timewise to say, ‘We ran this experiment and found that there was no immediate damage that was visible, but towards the very end of their lives we saw a marked increase in morbidity,or-


'''Bret:''' Yeah, I mean if you took a drug and it knocked 15 years off your life on average, that might not show up in any notable way in a short term study.
'''Bret:''' Yeah, I mean if you took a drug and it knocked 15 years off your life on average, that might not show up in any notable way in a short term study.
Line 1,037: Line 1,051:
'''Eric:''' Got it.
'''Eric:''' Got it.


'''Bret:''' Your eye cells don't. Now note, all of the tissues I've just mentioned, when's the last time you heard about anybody having, you know, cancer of the cartilage, of their knee, cancer of the heart,
'''Bret:''' Your eye cells don't. Now note, all of the tissues I've just mentioned,-when's the last time you heard about anybody having, cancer of the cartilage, of their knee, cancer of the heart?


'''Eric:''' If they get brain cancer, it tends to be glial—
'''Eric:''' If they get brain cancer, it tends to be glial—
Line 1,045: Line 1,059:
'''Eric:''' Right.
'''Eric:''' Right.


'''Bret:''' Okay. So Vioxx is known to do heart damage. That created a big scandal because how the hell did it get through drug safety testing? It turns out a lot of drugs have done this. We've seen it with Gleevec, Fen Phen, Arithromycin. Your doctors probably still doesn't know that Arithromycin does heart damage—
'''Bret:''' Okay. So Vioxx is known to do heart damage. That created a big scandal because how the hell did it get through drug safety testing? It turns out a lot of drugs have done this. We've seen it with Gleevec, Fen Phen, Arithromycin. Your doctors probably still doesn't [sic] know that Arithromycin does heart damage—


'''Eric:''' Yikes
'''Eric:''' Yikes
Line 1,055: Line 1,069:
'''Bret:''' It's like a huge fucking nightmare, right? Because—  
'''Bret:''' It's like a huge fucking nightmare, right? Because—  


'''Eric:''' Well, but it's this thing about, like, perseverance and disagreeability. You've got all sorts of things that sound like something that invalidates the theory, and then it’s sort of theories upon theories that allow you to see the original simplicity of the idea. I see the original idea is very simple—
'''Eric:''' Well, but it's this thing about perseverance and disagreeability. You've got all sorts of things that sound like something that invalidates the theory, and then it’s sort of theories upon theories that allow you to see the original simplicity of the idea. I see the original idea is very simple—


'''Bret:''' Yep.
'''Bret:''' Yep.
Line 1,067: Line 1,081:
'''Eric:''' OK, so now you've got a paper that's out. You've got a real world application. You've got a theory coming out of evolutionary theory. It's making a molecular prediction.  
'''Eric:''' OK, so now you've got a paper that's out. You've got a real world application. You've got a theory coming out of evolutionary theory. It's making a molecular prediction.  


'''Bret:''' Yup. Successfully predicts mouse telomeres.  
'''Bret:''' Yep. Successfully predicts mouse telomeres.  


'''Eric:''' One of the world's leading labs has confirmed the prediction.  
'''Eric:''' One of the world's leading labs has confirmed the prediction.  


'''Bret:''' Yup.
'''Bret:''' Yep.


'''Eric:''' Where are we now? What year is this?  
'''Eric:''' Where are we now? What year is this?  
59

edits